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Structure of PII from Synechococcus elongatus in complex with 2- oxoglutarate at high 2-OG concentrations
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 pH 7.4
Crystal Properties Matthews coefficient Solvent content 2.4 48.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.87 α = 90 b = 87.987 β = 90 c = 116.341 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 29 99.6 0.12 2.6 7.2 36239 2.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.25 98.1 0.78 2.6 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 29.09 36239 1908 100 0.18161 0.17929 0.1837 0.22488 0.2236 RANDOM 27.941
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.95 0.5 0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.764 r_dihedral_angle_4_deg 21.678 r_dihedral_angle_3_deg 17.535 r_dihedral_angle_1_deg 6.542 r_scangle_it 5.148 r_scbond_it 3.113 r_angle_refined_deg 2.041 r_mcangle_it 1.646 r_mcbond_it 0.865 r_chiral_restr 0.135
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.764 r_dihedral_angle_4_deg 21.678 r_dihedral_angle_3_deg 17.535 r_dihedral_angle_1_deg 6.542 r_scangle_it 5.148 r_scbond_it 3.113 r_angle_refined_deg 2.041 r_mcangle_it 1.646 r_mcbond_it 0.865 r_chiral_restr 0.135 r_bond_refined_d 0.029 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4918 Nucleic Acid Atoms Solvent Atoms 247 Heterogen Atoms 252
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing