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CRYSTAL STRUCTURE OF MACHE-Y337A-TZ2PA6 SYN COMPLEX (1 MTH)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1J06 PDB ENTRY 1J06
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 PROTEIN WAS CRYSTALLIZED FROM PEG-600 25-35% (V/V) IN 50-100 MM HEPES, PH 6.0-7.0, OR WITH PEG-550 MME 30% (V/V) IN 50 MM NA ACETATE, PH 7.5
Crystal Properties Matthews coefficient Solvent content 4.08 69.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.191 α = 90 b = 112.741 β = 90 c = 226.067 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2003-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 20 99 0.05 22.4 3.7 59477 2 65.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.72 99 0.45 3.6 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1J06 2.65 20 58015 1211 99.56 0.20789 0.207 0.2118 0.24981 0.2504 RANDOM 57.009
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 7.83 -8.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.127 r_dihedral_angle_4_deg 19.572 r_dihedral_angle_3_deg 16.711 r_dihedral_angle_1_deg 6.656 r_scangle_it 2.614 r_scbond_it 1.552 r_angle_refined_deg 1.468 r_mcangle_it 0.985 r_mcbond_it 0.517 r_chiral_restr 0.102
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.127 r_dihedral_angle_4_deg 19.572 r_dihedral_angle_3_deg 16.711 r_dihedral_angle_1_deg 6.656 r_scangle_it 2.614 r_scbond_it 1.552 r_angle_refined_deg 1.468 r_mcangle_it 0.985 r_mcbond_it 0.517 r_chiral_restr 0.102 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8332 Nucleic Acid Atoms Solvent Atoms 134 Heterogen Atoms 133
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALA data scaling REFMAC phasing