☰ Navigation Tabs
CATHEPSIN L WITH A NITRILE INHIBITOR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other IN HOUSE STRUCTURE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 3.5 0.1 M CITRIC ACID PH 3.5, 25 % PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.13 42.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.362 α = 90 b = 85.362 β = 90 c = 50.212 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2010-08-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 50 100 0.07 12.1 10.14 84484 -3 15.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.19 100 0.77 1.04 10.15
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT IN HOUSE STRUCTURE 1.12 42.68 72914 3814 95.8 0.14171 0.14036 0.1491 0.16725 0.1792 RANDOM 18.523
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.3 -0.65 -1.3 1.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.446 r_dihedral_angle_4_deg 15.926 r_dihedral_angle_3_deg 11.534 r_sphericity_free 11.255 r_sphericity_bonded 6.923 r_dihedral_angle_1_deg 5.58 r_rigid_bond_restr 4.677 r_angle_refined_deg 1.452 r_angle_other_deg 0.875 r_chiral_restr 0.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.446 r_dihedral_angle_4_deg 15.926 r_dihedral_angle_3_deg 11.534 r_sphericity_free 11.255 r_sphericity_bonded 6.923 r_dihedral_angle_1_deg 5.58 r_rigid_bond_restr 4.677 r_angle_refined_deg 1.452 r_angle_other_deg 0.875 r_chiral_restr 0.086 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1674 Nucleic Acid Atoms Solvent Atoms 252 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement XDS data reduction SADABS data scaling PHASER phasing