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CATHEPSIN L WITH A NITRILE INHIBITOR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4 20% PEG 2000, PH 4
Crystal Properties Matthews coefficient Solvent content 2.14 42.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.36 α = 105.62 b = 62.705 β = 93.24 c = 68.243 γ = 115.45
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-10-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 50 95.4 0.12 5.79 2.28 137183 -3 15.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.55 93.7 0.52 1.46 2.29
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.45 36.52 120732 4452 87.09 0.23504 0.23367 0.235 0.27217 0.2748 RANDOM 11.311
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.1 0.1 -0.13 -0.65 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.043 r_dihedral_angle_4_deg 14.929 r_dihedral_angle_3_deg 13.472 r_dihedral_angle_1_deg 5.611 r_angle_refined_deg 1.421 r_chiral_restr 0.095 r_mcbond_it 0.016 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.043 r_dihedral_angle_4_deg 14.929 r_dihedral_angle_3_deg 13.472 r_dihedral_angle_1_deg 5.611 r_angle_refined_deg 1.421 r_chiral_restr 0.095 r_mcbond_it 0.016 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6695 Nucleic Acid Atoms Solvent Atoms 720 Heterogen Atoms 140
Software Software Software Name Purpose REFMAC refinement XDS data reduction SADABS data scaling