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Crystal structure of nucleotide-free human GIMAP2, amino acid residues 1-260
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 11-12% 2-PROPANOL, 15% GLYCEROL, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.15 42.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.38 α = 90 b = 60.91 β = 90 c = 72.02 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2008-01-23 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9797, 0.9849 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 50 99.1 0.07 14.6 3.8 183804 1 26.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.8 95.9 0.5 3.2 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.5 19.14 38936 2085 99.82 0.18128 0.18009 0.1895 0.20382 RANDOM 12.251
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.64 -0.83 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.406 r_dihedral_angle_4_deg 21.154 r_dihedral_angle_3_deg 11.651 r_dihedral_angle_1_deg 4.904 r_scangle_it 3.481 r_scbond_it 2.238 r_mcangle_it 1.287 r_angle_refined_deg 1.161 r_mcbond_it 0.671 r_chiral_restr 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.406 r_dihedral_angle_4_deg 21.154 r_dihedral_angle_3_deg 11.651 r_dihedral_angle_1_deg 4.904 r_scangle_it 3.481 r_scbond_it 2.238 r_mcangle_it 1.287 r_angle_refined_deg 1.161 r_mcbond_it 0.671 r_chiral_restr 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1712 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling autoSHARP phasing