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Crystal structure of GDP-bound human GIMAP2, amino acid residues 21- 260
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 19% 2-PROPANOL, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.26 46.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.68 α = 90 b = 76.55 β = 90 c = 101.62 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2008-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 98.2 0.22 8.5 4.1 12565 1 35
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.97 97.6 0.6 2.89 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NONE 2.8 12 11467 591 97.49 0.23176 0.22941 0.2319 0.27565 0.233 RANDOM 30.574
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.52 -0.97 3.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.038 r_dihedral_angle_3_deg 17.118 r_dihedral_angle_4_deg 14.546 r_dihedral_angle_1_deg 4.528 r_angle_refined_deg 0.97 r_scangle_it 0.591 r_scbond_it 0.354 r_mcangle_it 0.202 r_mcbond_it 0.097 r_chiral_restr 0.058
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.038 r_dihedral_angle_3_deg 17.118 r_dihedral_angle_4_deg 14.546 r_dihedral_angle_1_deg 4.528 r_angle_refined_deg 0.97 r_scangle_it 0.591 r_scbond_it 0.354 r_mcangle_it 0.202 r_mcbond_it 0.097 r_chiral_restr 0.058 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3469 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing