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Crystal structure of GTP-bound human GIMAP2, amino acid residues 1- 234
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 6% 2-PROPANOL, 10 MM ATP, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.22 45.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.01 α = 90 b = 69.2 β = 90 c = 116.62 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-06-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 99.7 0.07 18.1 5.1 18848 1 32.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 98.8 0.53 3 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 19.44 17886 958 99.89 0.18637 0.18456 0.1852 0.22109 0.2173 RANDOM 24.901
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 0.73 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.09 r_dihedral_angle_4_deg 15.808 r_dihedral_angle_3_deg 12.349 r_dihedral_angle_1_deg 10.168 r_scangle_it 2.099 r_angle_refined_deg 1.403 r_scbond_it 1.299 r_mcangle_it 0.903 r_mcbond_it 0.554 r_nbtor_refined 0.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.09 r_dihedral_angle_4_deg 15.808 r_dihedral_angle_3_deg 12.349 r_dihedral_angle_1_deg 10.168 r_scangle_it 2.099 r_angle_refined_deg 1.403 r_scbond_it 1.299 r_mcangle_it 0.903 r_mcbond_it 0.554 r_nbtor_refined 0.293 r_symmetry_vdw_refined 0.225 r_symmetry_hbond_refined 0.185 r_nbd_refined 0.183 r_xyhbond_nbd_refined 0.11 r_chiral_restr 0.089 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1573 Nucleic Acid Atoms Solvent Atoms 113 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing