☰ Navigation Tabs
CRYSTAL STRUCTURE OF THE RHOGAP DOMAIN OF HUMAN PIK3R2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PBW PDB ENTRY 1PBW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 PROTEIN WAS CRYSTALLIZED FROM 0.1 M NACL, 0.85 M TRI-SODIUM CITRATE DIHYDRATE AND 0.1 M SODIUM CACODYLATE PH 6.5.
Crystal Properties Matthews coefficient Solvent content 1.91 35.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.661 α = 90 b = 34.354 β = 130.88 c = 71.317 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2010-03-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 47.33 95.6 0.05 9.9 3.7 9968 -3 29.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.09 2.21 76.6 0.21 3.7 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1PBW 2.09 53.92 9404 563 95.35 0.1942 0.19149 0.1931 0.2398 0.2455 RANDOM 29.775
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 1.22 1.09 0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.015 r_dihedral_angle_4_deg 14.722 r_dihedral_angle_3_deg 13.48 r_dihedral_angle_1_deg 5.016 r_scangle_it 1.646 r_angle_refined_deg 1.032 r_scbond_it 0.985 r_angle_other_deg 0.847 r_mcangle_it 0.608 r_mcbond_it 0.325
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.015 r_dihedral_angle_4_deg 14.722 r_dihedral_angle_3_deg 13.48 r_dihedral_angle_1_deg 5.016 r_scangle_it 1.646 r_angle_refined_deg 1.032 r_scbond_it 0.985 r_angle_other_deg 0.847 r_mcangle_it 0.608 r_mcbond_it 0.325 r_mcbond_other 0.067 r_chiral_restr 0.049 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1276 Nucleic Acid Atoms Solvent Atoms 81 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing