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Crystal Structure of Nicotiana tabacum malonyltransferase (NtMat1) complexed with malonyl-coa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.3M AMMONIUM ACETATE, 7% PEG 8K, 10% MPD, PH 5.5
Crystal Properties Matthews coefficient Solvent content 3.5 64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.079 α = 90 b = 98.079 β = 90 c = 151.84 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD SX-165 2005-10-25 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A 2 SYNCHROTRON NSLS BEAMLINE X3A NSLS X3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 20 99.4 0.11 20 4 25628 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.21 95.4 0.6 1.7 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 3.1 20 12928 1001 99.6 0.23 0.226 0.2066 0.289 0.278 RANDOM 82.65
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.68 0.68 -1.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.572 r_dihedral_angle_4_deg 20.852 r_dihedral_angle_3_deg 20.305 r_dihedral_angle_1_deg 7.765 r_scangle_it 3.991 r_scbond_it 2.358 r_angle_refined_deg 1.503 r_mcangle_it 0.815 r_mcbond_it 0.37 r_chiral_restr 0.107
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.572 r_dihedral_angle_4_deg 20.852 r_dihedral_angle_3_deg 20.305 r_dihedral_angle_1_deg 7.765 r_scangle_it 3.991 r_scbond_it 2.358 r_angle_refined_deg 1.503 r_mcangle_it 0.815 r_mcbond_it 0.37 r_chiral_restr 0.107 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3544 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling Auto-Rickshaw phasing