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Crystal structure of Physalis Mottle Virus with intact ordered RNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AUY PDB ENTRY 1AUY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 0.5M SODIUM ACETATE, 10 MM DITHIOTHRETOL, 2 MM CALCIUM CHLORIDE, 3 % PEG 6000, pH 5.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 285.4 α = 62.92 b = 288.36 β = 65.3 c = 290.61 γ = 60.85
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 2006-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 30 80 0.15 6.7 1.8 767743 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.4 3.52 80 0.37 2.04
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1AUY 3.4 30 661209 6502 69.1 0.308 0.308 0.5833 0.3112 0.5862 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.176 8.172 -15.717 -8.01 -4.997 14.186
RMS Deviations Key Refinement Restraint Deviation c_angle_deg 1.5448 c_bond_d 0.008263 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d
RMS Deviations Key Refinement Restraint Deviation c_angle_deg 1.5448 c_bond_d 0.008263 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot c_mcbond_it c_mcangle_it c_scbond_it c_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3944 Nucleic Acid Atoms 57 Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose CNS refinement AUTOMAR data reduction SCALEPACK data scaling AMoRE phasing