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Crystal structure of flavoprotein NrdI from Bacillus anthracis in the oxidised form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RLJ PDB ENTRY 1RLJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 10% (V/V) 2-PROPANOL, 0.2 M ZN ACETATE, 0.1 M NA CACODYLATE BUFFER PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.05 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.54 α = 90 b = 45.55 β = 90 c = 56.13 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD FOCUSING MIRRORS 2008-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.96 25 97.3 0.04 17.1 4.3 65488
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.96 0.98 77.8 0.6 2.9 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ENTRY 1RLJ 0.96 25 65488 1965 94.5 0.1241 0.1302 0.151 0.1502 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 20 927 1160.82
RMS Deviations Key Refinement Restraint Deviation s_approx_iso_adps 0.124 s_non_zero_chiral_vol 0.099 s_zero_chiral_vol 0.085 s_similar_adp_cmpnt 0.064 s_anti_bump_dis_restr 0.063 s_angle_d 0.036 s_from_restr_planes 0.0331 s_bond_d 0.016 s_rigid_bond_adp_cmpnt 0.006 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 936 Nucleic Acid Atoms Solvent Atoms 191 Heterogen Atoms 37
Software Software Software Name Purpose SHELXL-97 refinement XDS data reduction XSCALE data scaling MOLREP phasing