☰ Navigation Tabs
Crystal structure of thyroxine-binding globulin complexed with Furosemide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2RIV PDB ENTRY 2RIV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.4 20% PEG3350, pH 5.4
Crystal Properties Matthews coefficient Solvent content 2.35 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 172.88 α = 90 b = 42.15 β = 90 c = 56.19 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 34.58 92.6 0.19 4.3 3.7 40382 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 71.1 0.55 1.7 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2RIV 1.7 86.44 40382 2166 92.01 0.20574 0.2043 0.2157 0.23208 0.2439 RANDOM 10.798
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.8 2.43 -0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.66 r_dihedral_angle_3_deg 11.707 r_dihedral_angle_4_deg 8.598 r_dihedral_angle_1_deg 5.975 r_scangle_it 2.259 r_scbond_it 1.419 r_angle_refined_deg 1.104 r_mcangle_it 0.869 r_angle_other_deg 0.791 r_mcbond_it 0.461
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.66 r_dihedral_angle_3_deg 11.707 r_dihedral_angle_4_deg 8.598 r_dihedral_angle_1_deg 5.975 r_scangle_it 2.259 r_scbond_it 1.419 r_angle_refined_deg 1.104 r_mcangle_it 0.869 r_angle_other_deg 0.791 r_mcbond_it 0.461 r_mcbond_other 0.1 r_chiral_restr 0.067 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2951 Nucleic Acid Atoms Solvent Atoms 273 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling PHASER phasing