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Copper chaperone Atx1 from Synechocystis PCC6803 (Cu2 form)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XMJ PDB ENTRY 2XMJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 28 % (W/V) PEG 8000, 200 MM SODIUM ACETATE, 100 HEPES PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.12 41.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.243 α = 91.69 b = 29.388 β = 101.26 c = 38.702 γ = 118.62
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2008-07-10 M SINGLE WAVELENGTH 2 1 x-ray CCD MARRESEARCH MIRRORS
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29 2 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 25.57 98.4 0.06 22 6.8 10938
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.84 97.6 0.3 9.7 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2XMJ 1.75 37.58 10368 521 98.35 0.26915 0.26707 0.2767 0.31157 0.3098 RANDOM 24.512
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.45 -0.72 0.28 -0.3 -0.36 -0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 46.968 r_dihedral_angle_3_deg 16.998 r_dihedral_angle_1_deg 6.296 r_dihedral_angle_4_deg 5.862 r_scangle_it 3.168 r_scbond_it 1.784 r_mcangle_it 1.542 r_angle_refined_deg 1.536 r_angle_other_deg 0.96 r_mcbond_it 0.901
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 46.968 r_dihedral_angle_3_deg 16.998 r_dihedral_angle_1_deg 6.296 r_dihedral_angle_4_deg 5.862 r_scangle_it 3.168 r_scbond_it 1.784 r_mcangle_it 1.542 r_angle_refined_deg 1.536 r_angle_other_deg 0.96 r_mcbond_it 0.901 r_mcbond_other 0.206 r_chiral_restr 0.074 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 906 Nucleic Acid Atoms Solvent Atoms 15 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing