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Copper chaperone Atx1 from Synechocystis PCC6803 (Cu1 form)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XMJ PDB ENTRY 2XMJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 28%(W/V) PEG 8000, 200MM SODIUM ACETATE, 100MM SODIUM CACODYLATE PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.12 42.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.09 α = 100.89 b = 29.66 β = 92.58 c = 38.43 γ = 117.91
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2008-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 25 90.3 0.05 18.2 3.8 15929
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 88.1 0.37 3.9 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2XMJ 1.5 25 15092 807 90.15 0.16256 0.16041 0.1695 0.20279 0.2157 RANDOM 12.342
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 0.35 0.05 0.35 0.01 -0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 47.334 r_dihedral_angle_3_deg 11.602 r_sphericity_free 6.873 r_dihedral_angle_1_deg 5.737 r_scangle_it 5.431 r_sphericity_bonded 3.962 r_scbond_it 3.794 r_dihedral_angle_4_deg 2.81 r_mcangle_it 2.438 r_rigid_bond_restr 1.976
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 47.334 r_dihedral_angle_3_deg 11.602 r_sphericity_free 6.873 r_dihedral_angle_1_deg 5.737 r_scangle_it 5.431 r_sphericity_bonded 3.962 r_scbond_it 3.794 r_dihedral_angle_4_deg 2.81 r_mcangle_it 2.438 r_rigid_bond_restr 1.976 r_mcbond_it 1.619 r_angle_refined_deg 1.494 r_angle_other_deg 0.951 r_mcbond_other 0.758 r_chiral_restr 0.087 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 885 Nucleic Acid Atoms Solvent Atoms 132 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing