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Cytochrome c prime from Alcaligenes xylosoxidans: Ferrous R124E variant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 AMMONIUM SULPHATE, HEPES PH7.5, pH 7.4
Crystal Properties Matthews coefficient Solvent content 2.74 55.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.463 α = 90 b = 53.463 β = 90 c = 180.813 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 46 97.8 0.08 22.6 9.1 61966
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.14 88.5 0.4 3 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.1 46.3 58504 3139 97.54 0.14623 0.14496 0.1516 0.16988 0.1554 RANDOM 10.205
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.04 -0.08 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.656 r_dihedral_angle_4_deg 23.326 r_dihedral_angle_3_deg 13.499 r_dihedral_angle_1_deg 4.993 r_scangle_it 4.633 r_scbond_it 3.382 r_mcangle_it 2.621 r_angle_refined_deg 1.865 r_mcbond_it 1.717 r_rigid_bond_restr 1.388
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.656 r_dihedral_angle_4_deg 23.326 r_dihedral_angle_3_deg 13.499 r_dihedral_angle_1_deg 4.993 r_scangle_it 4.633 r_scbond_it 3.382 r_mcangle_it 2.621 r_angle_refined_deg 1.865 r_mcbond_it 1.717 r_rigid_bond_restr 1.388 r_angle_other_deg 1.001 r_mcbond_other 0.536 r_chiral_restr 0.106 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 956 Nucleic Acid Atoms Solvent Atoms 254 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing