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Cytochrome c prime from Alcaligenes xylosoxidans: Ferrous R124E variant with bound NO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 AMMONIUM SULPHATE, HEPES PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.82 56.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.11 α = 90 b = 54.11 β = 90 c = 181.336 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.14 28.7 98.7 0.04 35 8.7 58038
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.14 1.18 88.6 0.33 3 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.24 46.88 42727 2303 98.57 0.17558 0.17428 0.1754 0.1996 0.1964 RANDOM 14.369
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.13 0.57 1.13 -1.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.272 r_dihedral_angle_4_deg 17.222 r_dihedral_angle_3_deg 13.992 r_sphericity_free 10.493 r_angle_other_deg 8.99 r_sphericity_bonded 5.506 r_dihedral_angle_1_deg 5.375 r_mcbond_other 4.276 r_scangle_it 4.25 r_scbond_it 3.243
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.272 r_dihedral_angle_4_deg 17.222 r_dihedral_angle_3_deg 13.992 r_sphericity_free 10.493 r_angle_other_deg 8.99 r_sphericity_bonded 5.506 r_dihedral_angle_1_deg 5.375 r_mcbond_other 4.276 r_scangle_it 4.25 r_scbond_it 3.243 r_rigid_bond_restr 2.987 r_mcangle_it 2.656 r_angle_refined_deg 1.985 r_mcbond_it 1.825 r_chiral_restr 0.103 r_bond_refined_d 0.019 r_gen_planes_other 0.014 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 938 Nucleic Acid Atoms Solvent Atoms 188 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing