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Cytochrome c prime from Alcaligenes xylosoxidans: Ferrous R124Q variant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 AMMONIUM SULPHATE, HEPES PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.73 54.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.23 α = 90 b = 53.23 β = 90 c = 181.51 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 45 95 0.05 19 7 31045
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.5 84.1 0.76 3 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 44.68 29802 1242 100 0.18813 0.18681 0.1893 0.21966 0.2217 RANDOM 18.836
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.01 -0.51 -1.01 1.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.627 r_dihedral_angle_4_deg 27.982 r_dihedral_angle_3_deg 12.979 r_scangle_it 6.515 r_dihedral_angle_1_deg 5.465 r_scbond_it 4.844 r_mcangle_it 3.478 r_mcbond_it 2.437 r_angle_refined_deg 2.107 r_rigid_bond_restr 1.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.627 r_dihedral_angle_4_deg 27.982 r_dihedral_angle_3_deg 12.979 r_scangle_it 6.515 r_dihedral_angle_1_deg 5.465 r_scbond_it 4.844 r_mcangle_it 3.478 r_mcbond_it 2.437 r_angle_refined_deg 2.107 r_rigid_bond_restr 1.94 r_angle_other_deg 1.112 r_mcbond_other 1.015 r_chiral_restr 0.123 r_bond_refined_d 0.021 r_gen_planes_refined 0.011 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 916 Nucleic Acid Atoms Solvent Atoms 138 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing