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Crystal structure of Streptococcus suis Dpr with copper
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 30 - 35 % (V/V) PEG 400, 0.2 M CACL2, 0.1 M HEPES-NAOH (PH 7.4)
Crystal Properties Matthews coefficient Solvent content 2.2 44.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.84 α = 90 b = 137.71 β = 90 c = 142.12 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MARMOSAIC VERTICALLY FOCUSSING 2008-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 25 97.3 0.07 11.8 3.1 118636 2 35.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 79 0.35 2.7 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT FRIEDEL_LAW=FALSE WAS USED DURING DATA PROCESSING, AND A TOTAL OF 1225754 REFLECTIONS WERE PROCESSED. 2.1 24.76 112702 5932 100 0.16225 0.1597 0.1952 0.21101 0.2416 RANDOM 12.542
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.96 -0.46 -0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.474 r_dihedral_angle_4_deg 18.365 r_dihedral_angle_3_deg 15.408 r_dihedral_angle_1_deg 4.695 r_scangle_it 3.123 r_scbond_it 2.069 r_angle_refined_deg 1.345 r_mcangle_it 1.029 r_mcbond_it 0.568 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.474 r_dihedral_angle_4_deg 18.365 r_dihedral_angle_3_deg 15.408 r_dihedral_angle_1_deg 4.695 r_scangle_it 3.123 r_scbond_it 2.069 r_angle_refined_deg 1.345 r_mcangle_it 1.029 r_mcbond_it 0.568 r_chiral_restr 0.092 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14471 Nucleic Acid Atoms Solvent Atoms 1257 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling