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Structure and Copper-binding Properties of Methanobactins from Methylosinus trichosporium OB3b
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 4M SODIUM FORMATE, pH 7.5
Crystal Properties Matthews coefficient Solvent content 1.41 13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.475 α = 90 b = 29.475 β = 90 c = 29.48 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2009-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.92 20.84 95.7 0.06 25.1 11.3 9025 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.92 0.97 78.8 0.34 5.5 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE NONE 0.92 20 8586 439 95.7 0.1245 0.1418 0.1405 0.1511 THIN SHELL
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 13 92 165.46
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.148 s_zero_chiral_vol 0.14 s_similar_adp_cmpnt 0.052 s_angle_d 0.051 s_anti_bump_dis_restr 0.045 s_from_restr_planes 0.0349 s_bond_d 0.02 s_rigid_bond_adp_cmpnt 0.006 s_similar_dist s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 152 Nucleic Acid Atoms Solvent Atoms 12 Heterogen Atoms 5
Software Software Software Name Purpose SHELXL-97 refinement iMOSFLM data reduction SCALA data scaling SHELXDE phasing