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High resolution structure of the T55C mutant of CylR2.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UTX PDB ENTRY 1UTX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 VAPOUR DIFFUSION, 50MM HEPES PH 7.0, 0.2M NACL
Crystal Properties Matthews coefficient Solvent content 2.32 46.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.45 α = 90 b = 63.45 β = 90 c = 41.2 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2009-06-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.23 44.87 96.2 0.04 27.81 7.41 48194
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.23 1.33 93.6 0.2 8.86 6.92
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ENTRY 1UTX 1.23 44.87 46370 2359 96.2 0.148 0.15 0.1504 0.184 0.1807 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 22 1072.5 1204.65
RMS Deviations Key Refinement Restraint Deviation s_from_restr_planes 0.343 s_non_zero_chiral_vol 0.07 s_zero_chiral_vol 0.069 s_approx_iso_adps 0.055 s_anti_bump_dis_restr 0.053 s_similar_adp_cmpnt 0.036 s_angle_d 0.031 s_bond_d 0.013 s_rigid_bond_adp_cmpnt 0.004 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1052 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 12
Software Software Software Name Purpose SHELXL-97 refinement XDS data reduction SADABS data scaling PHASER phasing