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Pilus-presented adhesin, Spy0125 (Cpa), P1 form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.75 38 - 40 % PEG 4000, 200 MM SODIUM ACETATE AND 100 MM TRI-SODIUM CITRATE PH 5.6 - 5.9; 34 TO 36 % PEG 5000-MME, 100 MM AMMONIUM SULPHATE, 100 MM MES PH 6.0 - 6.5
Crystal Properties Matthews coefficient Solvent content 2.36 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.48 α = 86.06 b = 66.46 β = 90.06 c = 101.8 γ = 75.08
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRROS 2009-07-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 38 93.6 0.07 15.4 7 66113
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 74.9 0.32 5 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 1.9 34.11 62741 3370 93.6 0.207 0.206 0.232 0.2366 RANDOM 20.65
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 0.15 0.34 -0.55 -0.65 0.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.951 r_dihedral_angle_4_deg 18.219 r_dihedral_angle_3_deg 14.341 r_dihedral_angle_1_deg 5.677 r_scangle_it 3.493 r_scbond_it 2.235 r_angle_refined_deg 1.411 r_mcangle_it 1.278 r_angle_other_deg 0.871 r_mcbond_it 0.737
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.951 r_dihedral_angle_4_deg 18.219 r_dihedral_angle_3_deg 14.341 r_dihedral_angle_1_deg 5.677 r_scangle_it 3.493 r_scbond_it 2.235 r_angle_refined_deg 1.411 r_mcangle_it 1.278 r_angle_other_deg 0.871 r_mcbond_it 0.737 r_mcbond_other 0.215 r_chiral_restr 0.08 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4896 Nucleic Acid Atoms Solvent Atoms 527 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHENIX phasing