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High resolution structure of native CylR2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UTX PDB ENTRY 1UTX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 VAPOUR DIFFUSION, 50MM HEPES PH7.0, 0.2M NACL.
Crystal Properties Matthews coefficient Solvent content 2.8 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.412 α = 90 b = 63.412 β = 90 c = 41.315 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2009-06-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.21 28.36 96.1 0.05 20.94 7.3 48228
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.21 1.31 93.6 0.31 5.18 6.77
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ENTRY 1UTX 1.21 28.36 48228 2450 96.1 0.1367 0.146 0.1666 0.1761 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 19 1098.99 1212.77
RMS Deviations Key Refinement Restraint Deviation s_from_restr_planes 0.303 s_zero_chiral_vol 0.075 s_non_zero_chiral_vol 0.073 s_anti_bump_dis_restr 0.062 s_similar_adp_cmpnt 0.057 s_approx_iso_adps 0.057 s_angle_d 0.035 s_bond_d 0.013 s_rigid_bond_adp_cmpnt 0.005 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1064 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms 18
Software Software Software Name Purpose SHELXL-97 refinement XDS data reduction SADABS data scaling PHASER phasing