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Structure of the N-terminal domain of capsid protein from Rabbit Endogenous Lentivirus (RELIK)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 16-26% PEG3350, 0.1M NA-ACETATE PH 4.6
Crystal Properties Matthews coefficient Solvent content 1.94 33.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87 α = 90 b = 38.68 β = 114.87 c = 84.717 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 35 97.6 0.07 37 3.7 40134 2 20.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 97.2 0.45 3 3.7
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 1.502 29.659 0.03 38047 1954 92.48 0.1963 0.1951 0.1929 0.2182 0.2144 26.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.3514 -1.9097 -1.6398 2.9912
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.86 f_angle_d 0.966 f_chiral_restr 0.058 f_bond_d 0.006 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2099 Nucleic Acid Atoms Solvent Atoms 308 Heterogen Atoms 4
Software Software Software Name Purpose PHENIX refinement DENZO data reduction SCALING data scaling PHASER phasing