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Substrate and product analogues as human O-GlcNAc transferase inhibitors.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.1MCHES, PH 9.5, 25% POLYETHYLENEGLYCOL 3350
Crystal Properties Matthews coefficient Solvent content 2.25 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.534 α = 90 b = 99.982 β = 90 c = 157.196 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 97.8 0.05 16.3 4 42658 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.55 20 41266 1334 100 0.268 0.267 0.2784 0.309 0.3206 RANDOM 39.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.01 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.008 r_dihedral_angle_4_deg 22.75 r_dihedral_angle_3_deg 19.115 r_dihedral_angle_1_deg 7.695 r_angle_refined_deg 1.619 r_scangle_it 1.605 r_scbond_it 1.119 r_mcangle_it 0.797 r_mcbond_it 0.462 r_chiral_restr 0.109
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.008 r_dihedral_angle_4_deg 22.75 r_dihedral_angle_3_deg 19.115 r_dihedral_angle_1_deg 7.695 r_angle_refined_deg 1.619 r_scangle_it 1.605 r_scbond_it 1.119 r_mcangle_it 0.797 r_mcbond_it 0.462 r_chiral_restr 0.109 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8018 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement