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MTSL spin-labelled Shigella Flexneri Spa15
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RY9 PDB ENTRY 1RY9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 100 MM GUANIDINIUM CHLORIDE, 100 MM MES PH 6.0, 50 MM AMMONIUM SULPHATE, 5% ETHYLENE GLYCOL
Crystal Properties Matthews coefficient Solvent content 2.09 41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.98 α = 90 b = 50.38 β = 117.03 c = 57.68 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD ADSC QUANTUM 315 KIRKPATRICK BAEZ BIMORPH MIRROR PAIR FOR HORIZONTAL AND VERTICAL FOCUSSING 2009-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 51.38 98.7 0.17 4.4 3.5 19266 17.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 98.7 0.73 2 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1RY9 2.3 51.38 12036 650 98.28 0.22574 0.22369 0.2212 0.26375 0.257 RANDOM 21.956
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.78 0.53 -1.24 0.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.095 r_dihedral_angle_4_deg 15.338 r_dihedral_angle_3_deg 12.971 r_dihedral_angle_1_deg 6.99 r_angle_refined_deg 1.284 r_angle_other_deg 0.896 r_symmetry_vdw_other 0.281 r_symmetry_vdw_refined 0.213 r_symmetry_hbond_refined 0.208 r_xyhbond_nbd_refined 0.159
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.095 r_dihedral_angle_4_deg 15.338 r_dihedral_angle_3_deg 12.971 r_dihedral_angle_1_deg 6.99 r_angle_refined_deg 1.284 r_angle_other_deg 0.896 r_symmetry_vdw_other 0.281 r_symmetry_vdw_refined 0.213 r_symmetry_hbond_refined 0.208 r_xyhbond_nbd_refined 0.159 r_chiral_restr 0.07 r_mcbond_it 0.012 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2038 Nucleic Acid Atoms Solvent Atoms 80 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing