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Nocardia farcinica maleate cis-trans isomerase C194S mutant with a covalently bound succinylcysteine intermediate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XEC PDB ENTRY 2XEC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 20 MM NH4 FORMATE 100 MM MES PH 6.5 20% PEG 3350 50 MM NA MALEATE
Crystal Properties Matthews coefficient Solvent content 2.5 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.98 α = 90 b = 85.67 β = 90 c = 239.94 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2010-02-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 52.98 99.4 0.1 9.1 5.9 80183 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.06 99.8 0.72 2.3 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2XEC 1.95 20 75994 3997 99.19 0.22402 0.22214 0.2424 0.25957 0.2718 RANDOM 16.907
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.5 -0.15 -1.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.945 r_dihedral_angle_4_deg 19.115 r_dihedral_angle_3_deg 17.127 r_dihedral_angle_1_deg 5.824 r_scangle_it 2.581 r_scbond_it 1.634 r_angle_refined_deg 1.348 r_mcangle_it 0.845 r_mcbond_it 0.465 r_chiral_restr 0.097
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.945 r_dihedral_angle_4_deg 19.115 r_dihedral_angle_3_deg 17.127 r_dihedral_angle_1_deg 5.824 r_scangle_it 2.581 r_scbond_it 1.634 r_angle_refined_deg 1.348 r_mcangle_it 0.845 r_mcbond_it 0.465 r_chiral_restr 0.097 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7289 Nucleic Acid Atoms Solvent Atoms 635 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement PHASER phasing