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Raman crystallography of Hen White Egg Lysozyme - High X-ray dose (16 MGy)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BWH PDB ENTRY 1BWH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 75 MM SODIUM ACETATE PH 4.6, 1.0 M SODIUM CHLORIDE
Crystal Properties Matthews coefficient Solvent content 2 39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.77 α = 90 b = 78.77 β = 90 c = 37.11 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD FOCUSING MIRROR 2006-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.37 33 99.9 0.06 25.4 12.8 25118 4 21.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.37 1.45 99.9 0.52 3.7 7.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BWH 1.37 33.57 23868 1232 99.93 0.14948 0.14734 0.1441 0.19258 0.1862 RANDOM 20.81
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 -0.32 0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.001 r_dihedral_angle_4_deg 21.122 r_dihedral_angle_3_deg 14.68 r_scangle_it 7.616 r_dihedral_angle_1_deg 6.771 r_scbond_it 5.586 r_mcangle_it 3.965 r_rigid_bond_restr 3.016 r_mcbond_it 2.819 r_angle_refined_deg 2.182
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.001 r_dihedral_angle_4_deg 21.122 r_dihedral_angle_3_deg 14.68 r_scangle_it 7.616 r_dihedral_angle_1_deg 6.771 r_scbond_it 5.586 r_mcangle_it 3.965 r_rigid_bond_restr 3.016 r_mcbond_it 2.819 r_angle_refined_deg 2.182 r_chiral_restr 0.145 r_bond_refined_d 0.065 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 992 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing