☰ Navigation Tabs
Revisited crystal structure of Neurexin1beta-Neuroligin4 complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WQZ PDB ENTRY 2WQZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.3 100MM MES PH6.3,10% PEG 20000, 2MM CACL2
Crystal Properties Matthews coefficient Solvent content 3.2 59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.307 α = 90 b = 198.779 β = 90 c = 85.896 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-04-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 30 99.9 0.1 10.7 4.7 72526 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 100 0.55 2.8 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2WQZ 2.6 30 68827 3658 99.99 0.205 0.204 0.2023 0.236 0.2351 RANDOM 20.92
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.65 -1.76 -1.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.224 r_dihedral_angle_4_deg 21.426 r_dihedral_angle_3_deg 16.316 r_dihedral_angle_1_deg 6.254 r_scangle_it 3.35 r_scbond_it 2.119 r_angle_refined_deg 1.526 r_mcangle_it 1.258 r_angle_other_deg 1.168 r_mcbond_it 0.686
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.224 r_dihedral_angle_4_deg 21.426 r_dihedral_angle_3_deg 16.316 r_dihedral_angle_1_deg 6.254 r_scangle_it 3.35 r_scbond_it 2.119 r_angle_refined_deg 1.526 r_mcangle_it 1.258 r_angle_other_deg 1.168 r_mcbond_it 0.686 r_chiral_restr 0.097 r_mcbond_other 0.096 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.004 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11176 Nucleic Acid Atoms Solvent Atoms 349 Heterogen Atoms 195
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing