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Thioredoxin glutathione reductase from Schistosoma mansoni in complex with NADPH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 0.1 M HEPES AT PH 7.0, 20% PEG 3350, 0.2 M KSCN, 5 MM GSH, 0.4 MM NADPH.
Crystal Properties Matthews coefficient Solvent content 3.09 60.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.502 α = 90 b = 102.61 β = 112.82 c = 59.938 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 40 100 0.11 18.4 8.1 33294 2 35.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 99.9 0.4 3.8 7.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.3 40 33294 1743 100 0.19176 0.18971 0.1923 0.23119 0.2336 RANDOM 22.527
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.74 -0.58 -3.33 4.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.228 r_dihedral_angle_3_deg 14.557 r_dihedral_angle_4_deg 13.375 r_dihedral_angle_1_deg 5.96 r_scangle_it 2.678 r_scbond_it 1.625 r_angle_refined_deg 1.302 r_mcangle_it 0.987 r_mcbond_it 0.516 r_chiral_restr 0.087
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.228 r_dihedral_angle_3_deg 14.557 r_dihedral_angle_4_deg 13.375 r_dihedral_angle_1_deg 5.96 r_scangle_it 2.678 r_scbond_it 1.625 r_angle_refined_deg 1.302 r_mcangle_it 0.987 r_mcbond_it 0.516 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4496 Nucleic Acid Atoms Solvent Atoms 185 Heterogen Atoms 249
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PDBSET phasing