☰ Navigation Tabs
P450 BM3 F87A in complex with DMSO
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J4S PDB ENTRY 2J4S
Crystallization Crystal Properties Matthews coefficient Solvent content 3.19 61.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.21 α = 90 b = 96.639 β = 90 c = 164.197 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 47.62 99.7 0.11 12.42 6.49 58691 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.32 99.6 0.49 3.17 6.42
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2J4S 2.3 41.1 58625 2979 99.63 0.205 0.2027 0.2027 0.2499 0.2485 RANDOM 43.977
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.179 4.392 -2.213
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.467 r_dihedral_angle_4_deg 16.59 r_dihedral_angle_3_deg 15.176 r_dihedral_angle_1_deg 5.842 r_scangle_it 2.5 r_scbond_it 1.591 r_angle_refined_deg 1.289 r_mcangle_it 1.163 r_mcbond_it 0.697 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.467 r_dihedral_angle_4_deg 16.59 r_dihedral_angle_3_deg 15.176 r_dihedral_angle_1_deg 5.842 r_scangle_it 2.5 r_scbond_it 1.591 r_angle_refined_deg 1.289 r_mcangle_it 1.163 r_mcbond_it 0.697 r_nbtor_refined 0.299 r_xyhbond_nbd_refined 0.238 r_nbd_refined 0.201 r_symmetry_vdw_refined 0.17 r_symmetry_hbond_refined 0.12 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7330 Nucleic Acid Atoms Solvent Atoms 406 Heterogen Atoms 97
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing