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Staphylococcus aureus adenylosuccinate lyase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1C3C PDB ENTRY 1C3C
Crystallization Crystal Properties Matthews coefficient Solvent content 2.64 53.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.647 α = 90 b = 121.265 β = 90 c = 105.727 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2008-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 97 96.9 0.05 14.3 5.3 17795 56.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 98.7 0.49 2.6 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1C3C 2.5 40 16310 888 92.77 0.21772 0.21438 0.2461 0.28474 0.3157 RANDOM 17.805
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 10.2 -4.75 -5.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.588 r_dihedral_angle_3_deg 16.386 r_dihedral_angle_4_deg 14.533 r_dihedral_angle_1_deg 5.916 r_scangle_it 1.435 r_angle_refined_deg 1.16 r_scbond_it 0.873 r_angle_other_deg 0.855 r_mcangle_it 0.663 r_mcbond_it 0.369
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.588 r_dihedral_angle_3_deg 16.386 r_dihedral_angle_4_deg 14.533 r_dihedral_angle_1_deg 5.916 r_scangle_it 1.435 r_angle_refined_deg 1.16 r_scbond_it 0.873 r_angle_other_deg 0.855 r_mcangle_it 0.663 r_mcbond_it 0.369 r_mcbond_other 0.073 r_chiral_restr 0.06 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3459 Nucleic Acid Atoms Solvent Atoms 70 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing