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Crystal structure of the ORF131 L26M L51M double mutant from Sulfolobus islandicus rudivirus 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2X5G PDB ENTRY 2X5G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 2.1 M SODIUM MALONATE AND CRYOPROTECTED WITH 2.4 M MALONATE.
Crystal Properties Matthews coefficient Solvent content 2.2 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.94 α = 90.22 b = 46.971 β = 95.05 c = 48.976 γ = 91.78
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2004-07-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 14 97 0.04 24.8 3.4 28543
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 95 0.19 6.5 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2X5G 1.8 14 28543 1521 96.68 0.20282 0.19996 0.2069 0.25715 0.2631 RANDOM 27.173
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.33 -0.08 0.2 0.19 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.429 r_dihedral_angle_3_deg 14.229 r_dihedral_angle_4_deg 11.823 r_dihedral_angle_1_deg 5.658 r_scangle_it 2.451 r_scbond_it 1.787 r_angle_refined_deg 1.149 r_mcangle_it 0.995 r_mcbond_it 0.902 r_angle_other_deg 0.772
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.429 r_dihedral_angle_3_deg 14.229 r_dihedral_angle_4_deg 11.823 r_dihedral_angle_1_deg 5.658 r_scangle_it 2.451 r_scbond_it 1.787 r_angle_refined_deg 1.149 r_mcangle_it 0.995 r_mcbond_it 0.902 r_angle_other_deg 0.772 r_symmetry_vdw_other 0.225 r_nbd_refined 0.2 r_nbd_other 0.179 r_nbtor_refined 0.171 r_mcbond_other 0.16 r_symmetry_hbond_refined 0.159 r_symmetry_vdw_refined 0.154 r_xyhbond_nbd_refined 0.152 r_nbtor_other 0.082 r_chiral_restr 0.065 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2998 Nucleic Acid Atoms Solvent Atoms 380 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing