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Crystal structure of hypothetical protein ORF131 from Pyrobaculum Spherical Virus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 6.545% ISOPROPANOL, 0.1M TRIS-HCL, PH8.5. THE CRYOPROTECTANT USED WAS 30% GLYCEROL
Crystal Properties Matthews coefficient Solvent content 1.8 32.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.88 α = 90 b = 53.88 β = 90 c = 127.459 γ = 120
Symmetry Space Group P 32 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 2006-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 19 99 0.05 26.8 5.6 19587
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 89 0.48 2.68 4.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD NONE 1.8 18.824 1.34 19587 1001 98.15 0.1935 0.1917 0.1907 0.2268 0.2298
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.0158 -0.0158 0.0316
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.899 f_angle_d 1.543 f_chiral_restr 0.104 f_bond_d 0.018 f_plane_restr 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1587 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 8
Software Software Software Name Purpose PHENIX refinement HKL-2000 data reduction SCALEPACK data scaling SHELXCDE phasing