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CRYSTAL STRUCTURE OF WHEAT GERM AGGLUTININ ISOLECTIN 3 IN COMPLEX WITH A SYNTHETIC DIVALENT CARBOHYDRATE LIGAND
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WGT PDB ENTRY 1WGT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.04 M POTASSIUM PHOSPHATE, 14% PEG 8000, 20% GLYCEROL.
Crystal Properties Matthews coefficient Solvent content 2.11 42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.33 α = 90 b = 101.33 β = 90 c = 144.92 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2007-02-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 98.8 0.1 12.03 5.23 60413 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.8 93.2 0.46 2.44 3.69
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1WGT 1.7 75.08 57320 3077 98.84 0.15868 0.15802 0.1591 0.1712 0.1675 RANDOM 23.958
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.84 5.84 -11.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.375 r_dihedral_angle_3_deg 11.435 r_dihedral_angle_4_deg 9.582 r_dihedral_angle_1_deg 4.325 r_scangle_it 1.811 r_scbond_it 1.22 r_angle_refined_deg 1.036 r_mcangle_it 0.701 r_mcbond_it 0.383 r_chiral_restr 0.058
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.375 r_dihedral_angle_3_deg 11.435 r_dihedral_angle_4_deg 9.582 r_dihedral_angle_1_deg 4.325 r_scangle_it 1.811 r_scbond_it 1.22 r_angle_refined_deg 1.036 r_mcangle_it 0.701 r_mcbond_it 0.383 r_chiral_restr 0.058 r_gen_planes_refined 0.012 r_bond_refined_d 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2330 Nucleic Acid Atoms Solvent Atoms 178 Heterogen Atoms 188
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing