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structure of mouse syndapin I (crystal form 2)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.3 2.5UL SYNDAPIN(5MG/ML IN 50MM HEPES, 50MM NACL) MIXED WITH 0.5UL 0.3M GLYCYL-GLYCYL-GLYCINE AND 2UL WELL SOLUTION 0.1M NAAC/HAC PH5.0, 3%(W/V) PEG4000., pH 5.3
Crystal Properties Matthews coefficient Solvent content 2.2 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.28 α = 90 b = 154.61 β = 90 c = 191.74 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD DOUBLE CRYSTAL MONOCHROMATOR WITH 2 SETS OF MIRRORS 2009-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.64 34.35 99.7 0.13 10.81 7.17 38766 -3 64
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.64 2.75 99.1 0.69 2.88 7.03
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.64 34.36 36827 1939 100 0.22335 0.22066 0.2237 0.27373 0.275 THIN SHELLS 30.357
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.05 -6.14 4.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.929 r_dihedral_angle_3_deg 18.247 r_dihedral_angle_4_deg 14.226 r_scangle_it 5.59 r_dihedral_angle_1_deg 4.285 r_scbond_it 3.828 r_mcangle_it 2.463 r_mcbond_it 1.977 r_angle_refined_deg 0.85 r_angle_other_deg 0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.929 r_dihedral_angle_3_deg 18.247 r_dihedral_angle_4_deg 14.226 r_scangle_it 5.59 r_dihedral_angle_1_deg 4.285 r_scbond_it 3.828 r_mcangle_it 2.463 r_mcbond_it 1.977 r_angle_refined_deg 0.85 r_angle_other_deg 0.6 r_mcbond_other 0.37 r_symmetry_hbond_refined 0.285 r_symmetry_vdw_other 0.284 r_nbd_refined 0.27 r_symmetry_vdw_refined 0.234 r_nbd_other 0.232 r_xyhbond_nbd_refined 0.227 r_nbtor_refined 0.197 r_nbtor_other 0.095 r_xyhbond_nbd_other 0.073 r_chiral_restr 0.049 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_gen_planes_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7449 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing