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Crystal Structure of the hypothetical protein ORF119 from Sulfolobus islandicus rod-shaped virus 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 20% PEG 4000, 0.1 M SODIUM CITRATE PH 6.0. CRYSTALS WERE CRYOPROTECTED WITH 25% PEG400 IN A SOLUTION CONTAINING 22% PEG 4000, 0.1 M SODIUM CITRATE PH 6.0.
Crystal Properties Matthews coefficient Solvent content 2.31 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.38 α = 90 b = 46.17 β = 101.83 c = 40.02 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2008-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 38.84 100 0.08 15.8 6.5 11671
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 100 0.54 3.8 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.8 38.84 11671 592 99.97 0.19587 0.19355 0.1985 0.23786 0.2404 RANDOM 21.839
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.94 -1.61 -1.58 -2.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.144 r_dihedral_angle_4_deg 18.274 r_dihedral_angle_3_deg 15.119 r_dihedral_angle_1_deg 6.357 r_scangle_it 2.445 r_scbond_it 1.988 r_angle_refined_deg 1.183 r_mcangle_it 1.131 r_mcbond_it 0.922 r_angle_other_deg 0.758
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.144 r_dihedral_angle_4_deg 18.274 r_dihedral_angle_3_deg 15.119 r_dihedral_angle_1_deg 6.357 r_scangle_it 2.445 r_scbond_it 1.988 r_angle_refined_deg 1.183 r_mcangle_it 1.131 r_mcbond_it 0.922 r_angle_other_deg 0.758 r_nbd_refined 0.208 r_symmetry_vdw_other 0.2 r_nbtor_refined 0.192 r_nbd_other 0.175 r_mcbond_other 0.169 r_symmetry_hbond_refined 0.151 r_xyhbond_nbd_refined 0.14 r_symmetry_vdw_refined 0.106 r_nbtor_other 0.083 r_chiral_restr 0.069 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 992 Nucleic Acid Atoms Solvent Atoms 88 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling SHELXD phasing