X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1HCVPDB ENTRY 1HCV

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
130% PEG 1000, 100 MM PHOSPHATE/ CITRATE PH 4.4, 100 MM LISO4.
Crystal Properties
Matthews coefficientSolvent content
1.7629.48

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 35.908α = 90
b = 63.425β = 90.36
c = 50.01γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-1ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.062091.30.0715.23.9923211
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.061.177.80.343.783.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1HCV1.065087704461791.30.2140.2130.229RANDOM12.76
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.02-0.060.010.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.641
r_dihedral_angle_4_deg18.889
r_dihedral_angle_3_deg12.16
r_dihedral_angle_1_deg6.078
r_scangle_it2.116
r_scbond_it1.599
r_angle_refined_deg1.17
r_mcangle_it0.972
r_mcbond_it0.663
r_nbtor_refined0.301
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.641
r_dihedral_angle_4_deg18.889
r_dihedral_angle_3_deg12.16
r_dihedral_angle_1_deg6.078
r_scangle_it2.116
r_scbond_it1.599
r_angle_refined_deg1.17
r_mcangle_it0.972
r_mcbond_it0.663
r_nbtor_refined0.301
r_nbd_refined0.225
r_symmetry_vdw_refined0.126
r_xyhbond_nbd_refined0.12
r_symmetry_hbond_refined0.094
r_chiral_restr0.069
r_bond_refined_d0.007
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1852
Nucleic Acid Atoms
Solvent Atoms447
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKLdata reduction
SCALEPACKdata scaling
PHASERphasing