☰ Navigation Tabs
The crystal structure of the PH domain of human AKT3 protein kinase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UNP PDB ENTRY 1UNP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.2M PROLINE, 0.1M HEPES PH 7.5, 10% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.45 49.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.475 α = 111.47 b = 62.401 β = 102.75 c = 71.411 γ = 94.36
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2009-10-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.46 64.03 98.1 0.08 10 3.5 164858 15.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.46 1.54 94.3 0.47 2 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1UNP 1.46 64.03 156074 8269 98.11 0.19156 0.18934 0.1984 0.23377 0.2437 RANDOM 10.825
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.22 -0.22 -0.35 0.01 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.622 r_dihedral_angle_4_deg 13.965 r_dihedral_angle_3_deg 13.619 r_scangle_it 8.652 r_dihedral_angle_1_deg 6.36 r_scbond_it 6.19 r_mcangle_it 3.835 r_mcbond_it 2.557 r_angle_other_deg 2.369 r_angle_refined_deg 1.658
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.622 r_dihedral_angle_4_deg 13.965 r_dihedral_angle_3_deg 13.619 r_scangle_it 8.652 r_dihedral_angle_1_deg 6.36 r_scbond_it 6.19 r_mcangle_it 3.835 r_mcbond_it 2.557 r_angle_other_deg 2.369 r_angle_refined_deg 1.658 r_mcbond_other 0.83 r_chiral_restr 0.119 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7506 Nucleic Acid Atoms Solvent Atoms 1717 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing