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Structure of WsaF in complex with dTDP-beta-L-Rha
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2X0D PDB ENTRY 2X0D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.2 MM MG FORMATE, 20% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.16 42.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.94 α = 90 b = 75.65 β = 102.78 c = 77.48 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU-MSC SATURN 944 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 28.8 94.8 0.08 12.6 1.9 52047 2.55 54.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.64 66.9 0.41 2.5 1.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 2X0D 2.55 28.43 0.96 52027 2603 94.9 0.188 0.186 0.1788 0.23 0.1784 34.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.8865 -3.1346 7.0298 -4.1434
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.687 f_angle_d 1.356 f_chiral_restr 0.26 f_bond_d 0.026 f_plane_restr 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6239 Nucleic Acid Atoms Solvent Atoms 215 Heterogen Atoms 94
Software Software Software Name Purpose PHENIX refinement XDS data reduction XDS data scaling PHASER phasing