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Legionella glucosyltransferase (Lgt1) crystal structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 CRYSTALS WERE GROWN IN 0.1 M MGCL2, 12% PEG 6000, 0.1 M ACETAMIDO IMINODIACETIC ACID, PH 6.5. 2-METHYL-2,4-PENTANEDIOL (MPD) AT 20% IN MOTHER LIQUOR WAS USED AS A CRYOPROTECTANT.
Crystal Properties Matthews coefficient Solvent content 2.45 49.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.75 α = 90 b = 122.75 β = 90 c = 103.416 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 73 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 99.2 0.07 29 10.3 45918 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1 0.5 5.8 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.9 20 44388 680 98.45 0.20081 0.19995 0.1991 0.26175 0.2608 RANDOM 35.734
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.6 -0.8 -1.6 2.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.728 r_dihedral_angle_4_deg 22.279 r_dihedral_angle_3_deg 16.949 r_dihedral_angle_1_deg 9.877 r_scangle_it 3.488 r_scbond_it 2.115 r_angle_refined_deg 1.381 r_mcangle_it 1.358 r_mcbond_it 0.739 r_chiral_restr 0.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.728 r_dihedral_angle_4_deg 22.279 r_dihedral_angle_3_deg 16.949 r_dihedral_angle_1_deg 9.877 r_scangle_it 3.488 r_scbond_it 2.115 r_angle_refined_deg 1.381 r_mcangle_it 1.358 r_mcbond_it 0.739 r_chiral_restr 0.096 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4010 Nucleic Acid Atoms Solvent Atoms 318 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHELX phasing