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Family 35 carbohydrate binding module from Clostridium thermocellum
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2W1W PDB ENTRY 2W1W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.2 M MAGNESIUM ACETATE, 30% PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.8 33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.814 α = 90 b = 52.914 β = 90 c = 58.69 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 20 97.1 0.05 37.3 6.9 20322
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 95.8 0.12 12.1 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2W1W 1.5 19.27 19241 1036 96.93 0.1326 0.13044 0.1416 0.17538 0.1838 RANDOM 12.28
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.91 -0.08 -0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.131 r_dihedral_angle_4_deg 18.417 r_dihedral_angle_3_deg 11.758 r_sphericity_free 7.77 r_dihedral_angle_1_deg 6.309 r_scangle_it 4.541 r_sphericity_bonded 3.661 r_scbond_it 3.294 r_mcangle_it 2.396 r_angle_other_deg 1.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.131 r_dihedral_angle_4_deg 18.417 r_dihedral_angle_3_deg 11.758 r_sphericity_free 7.77 r_dihedral_angle_1_deg 6.309 r_scangle_it 4.541 r_sphericity_bonded 3.661 r_scbond_it 3.294 r_mcangle_it 2.396 r_angle_other_deg 1.68 r_rigid_bond_restr 1.655 r_mcbond_it 1.533 r_angle_refined_deg 1.457 r_mcbond_other 0.675 r_chiral_restr 0.097 r_bond_refined_d 0.015 r_bond_other_d 0.01 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1033 Nucleic Acid Atoms Solvent Atoms 191 Heterogen Atoms 2
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MrBUMP phasing MOLREP phasing REFMAC refinement