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L38V SOD1 mutant complexed with L-methionine.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2C9V PDB ENTRY 2C9V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.75 150 MM NACL, 2.0-3.0 M AMMONIUM SULPHATE, 100 MM ACETATE BUFFER PH 4.75
Crystal Properties Matthews coefficient Solvent content 2.2 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.996 α = 90 b = 68.025 β = 105.88 c = 50.633 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2008-05-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX10.1 SRS PX10.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 24 98.1 0.06 16.7 3.5 38024 17.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.54 82.1 0.28 3 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2C9V 1.5 24 38024 2004 98.04 0.19489 0.19165 0.25549 0.2818 RANDOM 13.821
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.36 -0.44 0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.968 r_dihedral_angle_3_deg 13.574 r_dihedral_angle_4_deg 12.482 r_dihedral_angle_1_deg 6.781 r_scangle_it 5.346 r_scbond_it 3.918 r_mcangle_it 2.55 r_mcbond_it 1.756 r_rigid_bond_restr 1.701 r_angle_refined_deg 1.688
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.968 r_dihedral_angle_3_deg 13.574 r_dihedral_angle_4_deg 12.482 r_dihedral_angle_1_deg 6.781 r_scangle_it 5.346 r_scbond_it 3.918 r_mcangle_it 2.55 r_mcbond_it 1.756 r_rigid_bond_restr 1.701 r_angle_refined_deg 1.688 r_angle_other_deg 1.292 r_mcbond_other 0.614 r_chiral_restr 0.105 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2218 Nucleic Acid Atoms Solvent Atoms 394 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing