☰ Navigation Tabs
L38V SOD1 mutant complexed with UMP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2C9V PDB ENTRY 2C9V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 150 MM NACL, 3.0 M AMMONIUM SULPHATE, 100 MM TRIS PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.1 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.717 α = 90 b = 67.589 β = 105.98 c = 50.777 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2006-11-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX10.1 SRS PX10.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 24 96.9 0.09 11 3.5 26774 14.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 69.9 0.4 2 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2C9V 1.7 24 25327 1340 96.18 0.17893 0.1756 0.1812 0.23934 0.2406 RANDOM 11.723
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 -0.03 -0.29 -0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.582 r_dihedral_angle_3_deg 14.156 r_dihedral_angle_4_deg 12.78 r_dihedral_angle_1_deg 12.516 r_scangle_it 3.382 r_scbond_it 2.188 r_mcangle_it 1.547 r_angle_refined_deg 1.485 r_mcbond_it 0.912 r_angle_other_deg 0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.582 r_dihedral_angle_3_deg 14.156 r_dihedral_angle_4_deg 12.78 r_dihedral_angle_1_deg 12.516 r_scangle_it 3.382 r_scbond_it 2.188 r_mcangle_it 1.547 r_angle_refined_deg 1.485 r_mcbond_it 0.912 r_angle_other_deg 0.88 r_mcbond_other 0.26 r_chiral_restr 0.089 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2220 Nucleic Acid Atoms Solvent Atoms 390 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing