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High resolution structure of Thermus thermophilus enoyl-acyl carrier protein reductase apo-form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ULU PDB ENTRY 1ULU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.4 20% (W/V) POLYETHYLENE GLYCOL 4000, 100 MM SODIUM CITRATE AT PH 5.4
Crystal Properties Matthews coefficient Solvent content 2.2 44.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.27 α = 90 b = 107.8 β = 95.89 c = 85.98 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL FOCUSING MIRROR 2008-07-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 15 96.4 0.06 8.7 2.9 151147 18.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 83.8 0.3 2 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ULU 1.5 14.96 149093 2001 99.96 0.17037 0.16995 0.1772 0.19972 0.2076 RANDOM 17.282
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.79 -1.44 -1.48 -0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.438 r_dihedral_angle_4_deg 14.592 r_dihedral_angle_3_deg 12.188 r_dihedral_angle_1_deg 5.677 r_scangle_it 4.209 r_scbond_it 2.467 r_mcangle_it 1.577 r_angle_refined_deg 1.467 r_angle_other_deg 0.963 r_mcbond_it 0.893
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.438 r_dihedral_angle_4_deg 14.592 r_dihedral_angle_3_deg 12.188 r_dihedral_angle_1_deg 5.677 r_scangle_it 4.209 r_scbond_it 2.467 r_mcangle_it 1.577 r_angle_refined_deg 1.467 r_angle_other_deg 0.963 r_mcbond_it 0.893 r_mcbond_other 0.235 r_symmetry_vdw_refined 0.227 r_metal_ion_refined 0.219 r_nbd_refined 0.217 r_symmetry_hbond_refined 0.181 r_nbd_other 0.18 r_nbtor_refined 0.177 r_symmetry_vdw_other 0.177 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.086 r_nbtor_other 0.084 r_xyhbond_nbd_other 0.032 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7657 Nucleic Acid Atoms Solvent Atoms 1064 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing