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foldon containing beta-turn mimic
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NAY PDB ENTRY 1NAY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 9 MM POTASSIUM PHOSPHATE, PH 7.0, 10% D2O
Crystal Properties Matthews coefficient Solvent content 2 36.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.73 α = 77.25 b = 28.5 β = 88 c = 48.755 γ = 69.45
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2009-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.06 40 94.1 0.03 19.2 2 58056 -3 4.41
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.06 1.12 86.8 0.07 9.5 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1NAY 1.06 26.02 56886 1170 94.22 0.10832 0.10766 0.1077 0.14024 0.141 RANDOM 8.441
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.57 0.29 0.28 0.18 0.06 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.74 r_dihedral_angle_3_deg 15.425 r_dihedral_angle_4_deg 13.301 r_dihedral_angle_1_deg 6.839 r_scangle_it 5.109 r_scbond_it 3.935 r_mcangle_it 3.683 r_mcbond_it 2.84 r_angle_refined_deg 2.809 r_angle_other_deg 2.525
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.74 r_dihedral_angle_3_deg 15.425 r_dihedral_angle_4_deg 13.301 r_dihedral_angle_1_deg 6.839 r_scangle_it 5.109 r_scbond_it 3.935 r_mcangle_it 3.683 r_mcbond_it 2.84 r_angle_refined_deg 2.809 r_angle_other_deg 2.525 r_rigid_bond_restr 1.968 r_mcbond_other 1.086 r_chiral_restr 0.153 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1332 Nucleic Acid Atoms Solvent Atoms 447 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing