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Crystal structure of an alpha-L-fucosidase GH29 from Bacteroides thetaiotaomicron
Crystallization Crystal Properties Matthews coefficient Solvent content 2.45 55.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.88 α = 90 b = 186.87 β = 94.47 c = 97.86 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD ADSC CCD 2009-04-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 48 99.7 0.08 10 3.7 208289 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.73 97.56 197776 10463 99.65 0.1939 0.19228 0.1914 0.22454 0.2234 RANDOM 21.782
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.59 0.18 -0.4 -1.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.952 r_dihedral_angle_4_deg 20.27 r_dihedral_angle_3_deg 14.232 r_dihedral_angle_1_deg 5.409 r_scangle_it 3.193 r_scbond_it 1.978 r_mcangle_it 1.212 r_angle_refined_deg 1.189 r_mcbond_it 0.643 r_chiral_restr 0.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.952 r_dihedral_angle_4_deg 20.27 r_dihedral_angle_3_deg 14.232 r_dihedral_angle_1_deg 5.409 r_scangle_it 3.193 r_scbond_it 1.978 r_mcangle_it 1.212 r_angle_refined_deg 1.189 r_mcbond_it 0.643 r_chiral_restr 0.086 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14389 Nucleic Acid Atoms Solvent Atoms 1089 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement BALBES phasing