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MurE ligase of Mycobacterium Tuberculosis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1E8C PDB ENTRY 1E8C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 0.35 M MGCL2, 0.1 M TRIS PH 8.5, 16% PEG 8000.
Crystal Properties Matthews coefficient Solvent content 1.96 37.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.92 α = 111.09 b = 79.8 β = 92.16 c = 82.92 γ = 93.98
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2008-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 56.3 91.2 0.07 11.1 1.7 33536 62.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.16 93.7 0.26 4.4 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1E8C 3 74.16 31855 1671 91.41 0.19549 0.19257 0.1963 0.25107 0.2485 RANDOM 15.811
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 -0.96 -1.78 1.61 1.22 -1.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.535 r_dihedral_angle_3_deg 21.593 r_dihedral_angle_4_deg 18.8 r_dihedral_angle_1_deg 6.323 r_scangle_it 3.025 r_angle_refined_deg 1.771 r_scbond_it 1.744 r_mcangle_it 0.999 r_mcbond_it 0.522 r_chiral_restr 0.165
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.535 r_dihedral_angle_3_deg 21.593 r_dihedral_angle_4_deg 18.8 r_dihedral_angle_1_deg 6.323 r_scangle_it 3.025 r_angle_refined_deg 1.771 r_scbond_it 1.744 r_mcangle_it 0.999 r_mcbond_it 0.522 r_chiral_restr 0.165 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13772 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 236
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MrBUMP phasing