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Head domain of porcine adenovirus type 4 NADC-1 isolate fibre
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KNB PDB ENTRY 1KNB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 10 MM TRIS-HCL PH 8.0, 1 MM EDTA, 1-10% (W/V) POLY-ETHYLENE GLYCOL 8000, 1 M LITHIUM SULPHATE
Crystal Properties Matthews coefficient Solvent content 5.9 79.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.729 α = 90 b = 145.439 β = 90 c = 147.601 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 CCD ENRAF-NONIUS KAPPACCD 2000 CONFOCAL MULTILAYER GRADED MIRRORS 2008-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 40 98.9 0.07 17.5 3.8 45035 62.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.32 97.5 0.31 2.9 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1KNB 3.2 29.21 40566 2026 95.37 0.17442 0.17302 0.1781 0.20138 0.2031 RANDOM 54.59
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.36 -0.11 -2.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.048 r_dihedral_angle_4_deg 21.716 r_dihedral_angle_3_deg 17.017 r_dihedral_angle_1_deg 6.81 r_scangle_it 3.178 r_mcangle_it 2.494 r_scbond_it 2.102 r_mcbond_it 1.516 r_angle_refined_deg 1.27 r_angle_other_deg 0.835
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.048 r_dihedral_angle_4_deg 21.716 r_dihedral_angle_3_deg 17.017 r_dihedral_angle_1_deg 6.81 r_scangle_it 3.178 r_mcangle_it 2.494 r_scbond_it 2.102 r_mcbond_it 1.516 r_angle_refined_deg 1.27 r_angle_other_deg 0.835 r_mcbond_other 0.642 r_symmetry_vdw_other 0.269 r_symmetry_hbond_refined 0.267 r_nbd_refined 0.199 r_nbd_other 0.188 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.13 r_symmetry_vdw_refined 0.122 r_nbtor_other 0.088 r_chiral_restr 0.067 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7980 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing