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Structure of bacteriophage T4 EndoII E118A mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 7 293 CRYSTALS WERE GROWN AT 20 DEGREES, USING THE METHOD MICRO-BATCH UNDER OIL. 2.5 UL PROTEIN SOLUTION (3 MG/ML) WAS MIXED USING VORTEX WITH 1.75 OR 2 UL OF CRYSTALLIZATION SOLUTION CONTAINING 30% PEG 3350, 100 MM BIS-TRIS BUFFER PH 7 AND 1% (W/V) N-OCTYL-B-D- GLUCOSIDE AND IMMEDIATELY PLACED UNDER PARAFFIN OIL. THE DROPS WERE IMMEDIATELY STREAK SEEDED AND CRYSTALS GREW IN A FEW HOURS.
Crystal Properties Matthews coefficient Solvent content 2.6 52.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.417 α = 90 b = 104.974 β = 113.56 c = 57.865 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2008-09-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 53.07 98.5 0.1 9.6 3.6 49469 25.89
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 90.9 0.62 1.6 2.9
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 1.9 53.042 1.18 49469 4572 92.51 0.202 0.1997 0.2471 0.2415 31.98
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.5176 -3.4359 0.6631 1.8545
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.047 f_angle_d 0.774 f_chiral_restr 0.056 f_bond_d 0.003 f_plane_restr 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4295 Nucleic Acid Atoms Solvent Atoms 373 Heterogen Atoms 19
Software Software Software Name Purpose PHENIX refinement MOSFLM data reduction SCALA data scaling PHASER phasing