☰ Navigation Tabs
CRYSTAL STRUCTURE OF THE MAJOR CARROT ALLERGEN DAU C 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BK0 PDB ENTRY 2BK0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.4 2% PEG 400, 100MM NA CITRATE PH 5.4, 2M AMMONIUM SULFATE
Crystal Properties Matthews coefficient Solvent content 4.1 70
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 189.948 α = 90 b = 189.948 β = 90 c = 189.948 γ = 90
Symmetry Space Group P 41 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-12-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 77.6 96.8 0.09 13 3.6 31520
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.85 96.5 0.4 3.1 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BK0 2.7 30 29881 1596 96.11 0.22228 0.22149 0.2267 0.23734 0.244 RANDOM 21.404
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.916 r_dihedral_angle_4_deg 28.581 r_dihedral_angle_3_deg 12.147 r_dihedral_angle_1_deg 5.504 r_scangle_it 2.64 r_scbond_it 1.478 r_angle_refined_deg 1.217 r_angle_other_deg 0.869 r_mcangle_it 0.71 r_mcbond_it 0.327
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.916 r_dihedral_angle_4_deg 28.581 r_dihedral_angle_3_deg 12.147 r_dihedral_angle_1_deg 5.504 r_scangle_it 2.64 r_scbond_it 1.478 r_angle_refined_deg 1.217 r_angle_other_deg 0.869 r_mcangle_it 0.71 r_mcbond_it 0.327 r_mcbond_other 0.069 r_chiral_restr 0.065 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4464 Nucleic Acid Atoms Solvent Atoms 16 Heterogen Atoms 146
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing